Software
- PSO motif finder: comming soon.
- Qcut and HQcut (for finding communities in networks). Also includes some scripts for visualizing clustering results, and for constructing and clustering gene co-expression networks. Download
- BDTree (a Bi-dimensional Regression Tree approach for modeling transcriptional regulation). Download
- Iterative Loop Matching (for predicting RNA secondary structures with pseudoknots), web server | Download